Core Data Structures

Represent high-dimensional datasets as features, samples and measurements

create_tidy_omic()

Create Tidy Omic

check_tidy_omic()

Check Tidy Omic

create_triple_omic()

Create Triple Omic

check_triple_omic()

Check Triple Omic

Converters

tomic_to()

T* Omic To

check_tomic()

Check T*Omic

tidy_to_triple()

Tidy omic to triple omic

triple_to_tidy()

Triple Omic to Tidy Omic

convert_wide_to_tidy_omic()

Convert Wide to Tidy Omic

Exports

export_tomic_as_tidy()

Export T*Omic in Tidy Format

export_tomic_as_triple()

Export T*Omic as Triple

export_tomic_as_wide()

Export T*Omic as Wide Data

Transformation

Filtering

filter_tomic()

Filter T* Omics

reconcile_triple_omic()

Reconcile Triple Omic

remove_missing_values()

Remove Missing Values

Mutates

update_tomic()

Update T* Omic

update_tidy_omic()

Update Tidy Omic

center_tomic()

Center T* Omic

add_pca_loadings()

Add PCA Loadings

sortInput()

Sort Input

sortServer()

Sort Server

sort_tomic()

Sort Triple Omic

sort_triple_arrange()

Sort Triple Arrange

sort_triple_hclust()

Sort Triple Hclust

impute_missing_values()

Impute Missing Values

Shiny Apps

Full Apps

app_flow()

Flow

app_heatmap()

Interactive Heatmap

app_pcs()

PC Plot

Modules (app components)

filterInput()

Filter Input

lassoInput()

Lasso Input

organizeInput()

Organize Input

plotsaverInput()

Plot Saver Input

sortInput()

Sort Input

ggBivOutput()

ggBivariate Output

ggUnivOutput()

ggUnivariate Output

ggplotOutput()

ggplot Output

filterServer()

Filter Server

ggBivServer()

ggBivariate Server

ggUnivServer()

ggUnivariate Server

ggplotServer()

ggplot Server

lassoServer()

Lasso Server

organizeServer()

Organize Servers

plotsaverServer()

Plot Saver Server

sortServer()

Sort Server

Module Examples

shiny_filter_test()

Shiny Filter Test

shiny_ggbiv_test()

Shiny ggBivariate Test

shiny_ggplot_test()

Shiny ggplot Test

shiny_gguniv_test()

Shiny ggUnivariate Test

shiny_lasso_test()

Shiny Lasso Test

shiny_lasso_test_reactval()

Shiny Lasso Test w/ Reactive Values

shiny_organize_test()

Shiny Organize Test

shiny_plotsaver_test()

Shiny Plot Saver Test

shiny_sort_test()

Shiny Sort Test

Static Visualizations

Plotting functions for tomic datasets

plot_bivariate()

Bivariate Plot

plot_heatmap()

Plot Heatmap

plot_univariate()

Univariate Plot

plotsaverInput()

Plot Saver Input

plotsaverServer()

Plot Saver Server

format_names_for_plotting()

Format Names for Plotting

downsample_heatmap()

Downsample Heatmap

Example Data

Datasets bundled with romic

brauer_2008 brauer_2008_tidy brauer_2008_triple

Brauer 2008

Utils

get_design_tbl()

Get Design Table

tomic_sort_status()

T* Omic Sort Status

Internal Functions

Meta

romic

romic package

prepare_example_datasets()

Prepare Example Datasets

Utils

hclust_order()

Hierarchical clustering order

infer_tomic_table_type()

Infer Tomic Table Type

try_brushedPoints()

Try brushedPoints