Function reference • romic

Core Data Structures Represent high-dimensional datasets as features, samples and measurements
`create_tidy_omic()`	Create Tidy Omic
`check_tidy_omic()`	Check Tidy Omic
`create_triple_omic()`	Create Triple Omic
`check_triple_omic()`	Check Triple Omic
Converters
`get_tomic_table()`	Get Tomic Table
`tomic_to()`	T* Omic To
`check_tomic()`	Check T*Omic
`tidy_to_triple()`	Tidy omic to triple omic
`triple_to_tidy()`	Triple Omic to Tidy Omic
`convert_wide_to_tidy_omic()`	Convert Wide to Tidy Omic
Exports
`export_tomic_as_tidy()`	Export T*Omic in Tidy Format
`export_tomic_as_triple()`	Export T*Omic as Triple
`export_tomic_as_wide()`	Export T*Omic as Wide Data
Transformation
Filtering
`filter_tomic()`	Filter T* Omics
`reconcile_triple_omic()`	Reconcile Triple Omic
`remove_missing_values()`	Remove Missing Values
Mutates
`update_tomic()`	Update T* Omic
`update_tidy_omic()`	Update Tidy Omic
`center_tomic()`	Center T* Omic
`add_pcs()`	Add PCA Loadings
`sortInput()`	Sort Input
`sortServer()`	Sort Server
`sort_tomic()`	Sort Triple Omic
`sort_triple_arrange()`	Sort Triple Arrange
`sort_triple_hclust()`	Sort Triple Hclust
`impute_missing_values()`	Impute Missing Values
Shiny Apps
Full Apps
`app_flow()`	Flow
`app_heatmap()`	Interactive Heatmap
`app_pcs()`	PC Plot
Modules (app components)
`filterInput()`	Filter Input
`lassoInput()`	Lasso Input
`organizeInput()`	Organize Input
`plotsaverInput()`	Plot Saver Input
`sortInput()`	Sort Input
`ggBivOutput()`	ggBivariate Output
`ggUnivOutput()`	ggUnivariate Output
`ggplotOutput()`	ggplot Output
`filterServer()`	Filter Server
`ggBivServer()`	ggBivariate Server
`ggUnivServer()`	ggUnivariate Server
`ggplotServer()`	ggplot Server
`lassoServer()`	Lasso Server
`organizeServer()`	Organize Servers
`plotsaverServer()`	Plot Saver Server
`sortServer()`	Sort Server
Module Examples
`shiny_filter_test()`	Shiny Filter Test
`shiny_ggbiv_test()`	Shiny ggBivariate Test
`shiny_ggplot_test()`	Shiny ggplot Test
`shiny_gguniv_test()`	Shiny ggUnivariate Test
`shiny_lasso_test()`	Shiny Lasso Test
`shiny_lasso_test_reactval()`	Shiny Lasso Test w/ Reactive Values
`shiny_organize_test()`	Shiny Organize Test
`shiny_plotsaver_test()`	Shiny Plot Saver Test
`shiny_sort_test()`	Shiny Sort Test
Static Visualizations Plotting functions for tomic datasets
`plot_bivariate()`	Bivariate Plot
`plot_heatmap()`	Plot Heatmap
`plot_univariate()`	Univariate Plot
`plotsaverInput()`	Plot Saver Input
`plotsaverServer()`	Plot Saver Server
`format_names_for_plotting()`	Format Names for Plotting
`downsample_heatmap()`	Downsample Heatmap
Example Data Datasets bundled with romic
`brauer_2008` `brauer_2008_tidy` `brauer_2008_triple`	Brauer 2008
Utils
`get_design_tbl()`	Get Design Table
`tomic_sort_status()`	T* Omic Sort Status
Internal Functions
Meta
`romic` `romic-package`	romic: R for High-Dimensional Omic Data
`prepare_example_datasets()`	Prepare Example Datasets
Utils
`hclust_order()`	Hierarchical clustering order
`infer_tomic_table_type()`	Infer Tomic Table Type
`try_brushedPoints()`	Try brushedPoints
`var_partial_match()`	Var Partial Match

Reference

Core Data Structures

Converters

Exports

Transformation

Filtering

Mutates

Shiny Apps

Full Apps

Modules (app components)

Module Examples

Static Visualizations

Example Data

Utils

Internal Functions

Meta

Utils