Brauer 2008 — brauer_2008 • romic

An RNA expression (microarray) dataset looking at how yeast gene expression changes as nutrient sources and nutrient richness changes.

brauer_2008 formatted as a tidy_omic object

brauer_2008 formatted as a triple_omic object

brauer_2008

brauer_2008_tidy

brauer_2008_triple

Format

A tibble with 18,000 rows and 8 columns:

name: Common gene name
BP: Gene ontology biological process of the gene
MF: Gene ontology molecular function of the gene
sample: Sample name
nutrient: Which nutrient limits growth (Glucose, Nitrogen, Phosphorous, Sulfur, Uracil, Leucine
DR: Dilution rate of the culture - basically how fast the cells are growing
expression: Expression level of the gene, log2 observation relative to a replicate of G0.3

An object of class tidy_omic (inherits from tomic, general) of length 2.

An object of class triple_omic (inherits from tomic, general) of length 4.

This version of the dataset contains only 500 genes randomly selected from the ~6K genes in the complete dataset.