get_tomic_table.RdExtract one of the specific tables from a tomic object
get_tomic_table(tomic, table_type)Either a tidy_omic or triple_omic object
The type of table to extract from the tomic object.
one row per measurements with feature and sample attributes added. Equivalent to the $data field of a tidy omic object
one row per measurements defined a feature and sample foreign key. Equivalent to the $measurements field of a triple omic object
one row per feature defined by a feature primary key. Equivalent to the $features field of a triple omic object
one row per sample defined by a sample primary key. Equivalent to the $samples field of a triple omic object
a tibble matching the table_type of the tomic object
get_tomic_table(brauer_2008_triple, "samples")
#> # A tibble: 36 × 3
#> sample nutrient DR
#> <chr> <chr> <dbl>
#> 1 G0.05 G 0.05
#> 2 G0.1 G 0.1
#> 3 G0.15 G 0.15
#> 4 G0.2 G 0.2
#> 5 G0.25 G 0.25
#> 6 G0.3 G 0.3
#> 7 N0.05 N 0.05
#> 8 N0.1 N 0.1
#> 9 N0.15 N 0.15
#> 10 N0.2 N 0.2
#> # ℹ 26 more rows
get_tomic_table(brauer_2008_tidy, "features")
#> # A tibble: 500 × 4
#> name BP MF systematic_name
#> <chr> <chr> <chr> <chr>
#> 1 YOL029C biological process unknown mole… YOL029C
#> 2 SCW11 cytokinesis, completion of separation gluc… YGL028C
#> 3 YHR036W biological process unknown mole… YHR036W
#> 4 BGL2 cell wall organization and biogenesis gluc… YGR282C
#> 5 ACT1 cell wall organization and biogenesis* stru… YFL039C
#> 6 FKH1 pseudohyphal growth* tran… YIL131C
#> 7 HOC1 cell wall mannoprotein biosynthesis* tran… YJR075W
#> 8 CSN12 adaptation to pheromone during conjugation wit… mole… YJR084W
#> 9 YAL046C biological process unknown mole… YAL046C
#> 10 SLG1 cell wall organization and biogenesis* tran… YOR008C
#> # ℹ 490 more rows