Plot Barplots

Plot Barplots

plot_barplot(mzroll_list, groupIds, grouping_vars, value_var, fill_var = NULL)

Arguments

mzroll_list

output of process_mzroll or process_mzroll_multi

  • features: one row per unique analyte (defined by a unique groupId),

  • samples: one row per unique sample (defined by a unique sampleId),

  • measurements: one row per peak (samples x peakgroups)
groupIds

groupIds for compounds to plot
grouping_vars

variables to use for ordering samples and calculating standard errors
value_var

measurement variable
fill_var

variable to use for filling bars

Examples


plot_barplot(
  mzroll_list = nplug_mzroll_normalized,
  groupIds = 1:4,
  grouping_vars = c("limitation", "DR"),
  value_var = "normalized_log2_abundance",
  fill_var = "limitation"
)